1CBV	Immune System Dna	date	Mar 16, 1993
title	An Autoantibody To Single-Stranded Dna: Comparison Of The Th Dimensional Structures Of The Unliganded Fab And A Deoxynuc Fab Complex
authors	J.N.Herron, X.M.He, D.W.Ballard, P.R.Blier, P.E.Pace, A.L.M.Bothw E.W.Voss Junior, A.B.Edmundson
compound		source
Molecule: Dna (5'-D(Tptpt)-3') Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Protein (Fab (Bv04-01) Autoantibody-Light Chain) Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Protein (Fab (Bv04-01) Autoantibody-Heavy Chain) Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 1 21 1	R_factor 0.191 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.500 99.200 36.600 90.00 95.30 90.00
method	X-Ray Diffraction	resolution	2.66 Å
related structures	by homologous chain: 1CFN, 1FJ1
Gene Ontology	Chain Function Process Component L
Primary reference	An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex., Herron JN, He XM, Ballard DW, Blier PR, Pace PE, Bothwell AL, Voss EW Jr, Edmundson AB, Proteins. 1991;11(3):159-75. PMID:1749770

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (1cbv.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 1CBV Likely Quarternary Molecular Structure file(s) for 1CBV Retrieve 1CBV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CBV from S2C, [Save to disk]

View 1CBV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CBV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CBV, from MSDmotif at EBI Genome occurence of 1CBV's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cbvh1, region H:1-122 [Jmol] [rasmolscript] [script source]     - Domain d1cbvh2, region H:123-219 [Jmol] [rasmolscript] [script source]     - Domain d1cbvl1, region L:1-112 [Jmol] [rasmolscript] [script source]     - Domain d1cbvl2, region L:113-219 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cbv_D] [1cbv] [1cbv_L] [1cbv_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1CBV: [IG_like] [IGv ] by SMART

Other resources with information on 1CBV

Community annotation for 1CBV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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