1CF4 Transferase date Mar 23, 1999
title Cdc42ack Gtpase-Binding Domain Complex
authors H.R.Mott, D.Owen, D.Nietlispach, P.N.Lowe, L.Lim, E.D.Laue
compound source
Molecule: Protein (Cdc42 Homolog)
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Activated P21cdc42hs Kinase)
Chain: B
Fragment: Gtpase-Binding Domain
Other_details: Complexed With 5'-Guanosyl-Imido-Triphosphat

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand GNP, MG enzyme
note 1CF4 is a representative structure
related structures by homologous chain: 1CEE, 1E0A
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin protein ligase act...


  • Primary referenceStructure of the small G protein Cdc42 bound to the GTPase-binding domain of ACK., Mott HR, Owen D, Nietlispach D, Lowe PN, Manser E, Lim L, Laue ED, Nature 1999 May 27;399(6734):384-8. PMID:10360579
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1170 Kb) [Save to disk]
  • Biological Unit Coordinates (1cf4.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1CF4
  • CSU: Contacts of Structural Units for 1CF4
  • Retrieve 1CF4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CF4 from S2C, [Save to disk]
  • View 1CF4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CF4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CF4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cf4a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cf4_B] [1cf4_A] [1cf4]
  • SWISS-PROT database: [Q07912] [P60953]
  • Domain organization of [ACK1_HUMAN] [CDC42_HUMAN] by SWISSPFAM
  • Domain found in 1CF4: [RHO ] by SMART
  • Other resources with information on 1CF4
  • Community annotation for 1CF4 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CF4 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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