1CF7	Transcription Dna	date	Mar 24, 1999
title	Structural Basis Of Dna Recognition By The Heterodimeric Cel Transcription Factor E2f-Dp
authors	N.Zheng, E.Fraenkel, C.O.Pabo, N.P.Pavletich
compound		source
Molecule: Dna (5'-D(Aptptptptpcpgpcpgpcpgpgptp 3'); Chain: C Fragment: Adenovirus Type 5 E2 Promoter E2f-Binding Site Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Tpapapapapcpcpgpcpgpcpgpap 3'); Chain: D Fragment: Adenovirus Type 5 E2 Promoter E2f-Binding Site Engineered: Yes		Synthetic: Yes
Molecule: Protein (Transcription Factor E2f-4) Chain: A Fragment: Dna-Binding Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Bl21(De3) Expression_system_cellular_location: Cytoplasm Expression_system_plasmid: Pgex-4t3
Molecule: Protein (Transcription Factor Dp-2) Chain: B Fragment: Dna-Binding Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Bl21(De3) Expression_system_cellular_location: Cytoplasm Expression_system_plasmid: Pgex-4t3
symmetry	Space Group: P 31 2 1	R_factor 0.223 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.300 101.300 73.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP., Zheng N, Fraenkel E, Pabo CO, Pavletich NP, Genes Dev 1999 Mar 15;13(6):666-74. PMID:10090723

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1cf7.pdb1.gz) 37 Kb CSU: Contacts of Structural Units for 1CF7 Likely Quarternary Molecular Structure file(s) for 1CF7 Retrieve 1CF7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CF7 from S2C, [Save to disk]

View 1CF7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CF7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CF7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cf7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1cf7b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cf7_B] [1cf7_C] [1cf7_D] [1cf7] [1cf7_A] SWISS-PROT database: [Q16254] [Q14188] Domain organization of [E2F4_HUMAN] [TFDP2_HUMAN] by SWISSPFAM Domain found in 1CF7: [E2F_TDP ] by SMART

Other resources with information on 1CF7

Community annotation for 1CF7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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