1CIX Antimicrobial Peptide date Apr 06, 1999
title Three-Dimensional Structure Of Antimicrobial Peptide Tachyst Isolated From Horseshoe Crab
authors N.Fujitani, S.Kawabata, T.Osaki, Y.Kumaki, M.Demura, K.Nitta, K.Ka
compound source
Molecule: Protein (Tachystatin A)
Chain: A
 Organism_scientific: Tachypleus Tridentatus
Organism_taxid: 6853
Other_details: Hemolymph Of Horseshoe Crab
methodSolution NMR
note 1CIX is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceStructure of the antimicrobial peptide tachystatin A., Fujitani N, Kawabata S, Osaki T, Kumaki Y, Demura M, Nitta K, Kawano K, J Biol Chem 2002 Jun 28;277(26):23651-7. PMID:11959852
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (1cix.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1CIX
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1CIX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CIX from S2C, [Save to disk]
    • View 1CIX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CIX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CIX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cixa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cix] [1cix_A]
  • SWISS-PROT database: [Q9U8X3]
  • Domain organization of [TACA2_TACTR] by SWISSPFAM
    • Other resources with information on 1CIX
  • Community annotation for 1CIX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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