1CJS	Ribosome	date	Apr 19, 1999
title	Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii
authors	N.Nevskaya, S.Tishchenko, R.Fedorov, S.Al-Karadaghi, A.Liljas, A. W.Piendl, M.Garber, S.Nikonov
compound		source
Molecule: 50s Ribosomal Protein L1p Chain: A Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Gene: Rpla Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11amjal1 Expression_system_gene: Mjal1
symmetry	Space Group: P 1	R_factor 0.203 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.407 39.910 55.634 83.03 80.25 74.68
method	X-Ray Diffraction	resolution	2.30 Å
related structures	by homologous chain: 1DWU, 1I2A
Gene Ontology	Chain Function Process Component A
Primary reference	Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family., Nevskaya N, Tischenko S, Fedorov R, Al-Karadaghi S, Liljas A, Kraft A, Piendl W, Garber M, Nikonov S, Structure Fold Des 2000 Apr 15;8(4):363-71. PMID:10801481

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (1cjs.pdb1.gz) 35 Kb CSU: Contacts of Structural Units for 1CJS Likely Quarternary Molecular Structure file(s) for 1CJS Structure Factors (90 Kb) Retrieve 1CJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CJS from S2C, [Save to disk] Re-refined 1cjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1CJS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CJS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CJS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cjsa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cjs] [1cjs_A] SWISS-PROT database: [P54050] Domain organization of [RL1_METJA] by SWISSPFAM

Other resources with information on 1CJS

Community annotation for 1CJS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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