1COD Short Neurotoxin date May 11, 1994
title Solution Conformation Of Cobrotoxin: A Nuclear Magnetic Reso Hybrid Distance Geometry-Dynamical Simulated Annealing Stud
authors C.Yu, R.Bhaskaran, C.C.Yang
compound source
Molecule: Cobrotoxin
Chain: A
Engineered: Yes
 Organism_scientific: Naja Atra
Organism_common: Chinese Cobra
Organism_taxid: 8656
Tissue: Venom
methodSolution NMR
related structures by homologous chain: 1COE, 1NOR
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceSolution conformation of cobrotoxin: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study., Yu C, Bhaskaran R, Chuang LC, Yang CC, Biochemistry 1993 Mar 9;32(9):2131-6. PMID:8443154
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1cod.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1COD
  • Retrieve 1COD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1COD from S2C, [Save to disk]
    • View 1COD in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1COD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1COD, from MSDmotif at EBI
  • Genome occurence of 1COD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cod__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cod_A] [1cod]
  • SWISS-PROT database: [Q9PTT0]
  • Domain organization of [CBTA_NAJNA] by SWISSPFAM
    • Other resources with information on 1COD
  • Community annotation for 1COD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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