1COJ Oxidoreductase date May 28, 1999
title Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacteriu
authors J.H.Lim, Y.G.Yu, S.H.Kim, S.J.Cho, B.Y.Ahn, Y.S.Han, Y.Cho
compound source
Molecule: Protein (Superoxide Dismutase)
Chain: A
Engineered: Yes
 Organism_scientific: Aquifex Pyrophilus
Organism_taxid: 2714
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Other_details: German Collection Of Microorganisms (Dsm)
symmetry Space Group: I 2 2 2
R_factor 0.170 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.700 75.630 87.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...


    • Primary referenceThe crystal structure of an Fe-superoxide dismutase from the hyperthermophile Aquifex pyrophilus at 1.9 A resolution: structural basis for thermostability., Lim JH, Yu YG, Han YS, Cho S, Ahn BY, Kim SH, Cho Y, J Mol Biol 1997 Jul 11;270(2):259-74. PMID:9236127
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1coj.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 1COJ
  • CSU: Contacts of Structural Units for 1COJ
  • Likely Quarternary Molecular Structure file(s) for 1COJ
  • Retrieve 1COJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1COJ from S2C, [Save to disk]
    • View 1COJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1COJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1COJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1coja1, region A:2-90 [Jmol] [rasmolscript] [script source]
        - Domain d1coja2, region A:91-212 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1coj_A] [1coj]
  • SWISS-PROT database: [Q9X6W9]
  • Domain organization of [SODF_AQUPY] by SWISSPFAM
    • Other resources with information on 1COJ
  • Community annotation for 1COJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science