1COM Chorismate Mutase date Apr 08, 1994
title The Monofunctional Chorismate Mutase From Bacillus Subtilis: Determination Of Chorismate Mutase And Its Complexes With A Transition State Analog And Prephenate, And Implications On Mechanism Of Enzymatic Reaction
authors Y.M.Chook, H.Ke, W.N.Lipscomb
compound source
Molecule: Chorismate Mutase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Ec: 5.4.99.5
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.400 68.300 102.800 90.00 105.60 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PRE enzyme Isomerase E.C.5.4.99.5 BRENDA
related structures by homologous chain: 1FNK, 2CHT
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceThe monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction., Chook YM, Gray JV, Ke H, Lipscomb WN, J Mol Biol 1994 Jul 29;240(5):476-500. PMID:8046752
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (1com.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (1com.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (1com.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (1com.pdb4.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 1COM
  • CSU: Contacts of Structural Units for 1COM
  • Likely Quarternary Molecular Structure file(s) for 1COM
  • Retrieve 1COM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1COM from S2C, [Save to disk]
  • View 1COM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1COM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1COM, from MSDmotif at EBI
  • Genome occurence of 1COM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1coma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1comb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1comc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1comd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1come_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1comf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1comg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1comh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1comi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1comj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1comk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1coml_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1com] [1com_L] [1com_G] [1com_H] [1com_C] [1com_K] [1com_B] [1com_J] [1com_I] [1com_E] [1com_D] [1com_F] [1com_A]
  • SWISS-PROT database: [P19080]
  • Domain organization of [CHMU_BACSU] by SWISSPFAM
  • Other resources with information on 1COM
  • Community annotation for 1COM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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