1COW Hydrogen Ion Transport date May 08, 1996
title Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
authors M.J.Van Raaij, J.P.Abrahams, A.G.W.Leslie, J.E.Walker
compound source
Molecule: Bovine Mitochondrial F1-Atpase
Chain: A, B, C
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: D, E, F
Ec: 3.6.1.34

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: G
Ec: 3.6.1.34

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor
R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
283.400 107.600 140.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand ADP, ANP, AUR, MG enzyme Hydrolase E.C.3.6.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


G


Primary referenceThe structure of bovine F1-ATPase complexed with the antibiotic inhibitor aurovertin B., van Raaij MJ, Abrahams JP, Leslie AG, Walker JE, Proc Natl Acad Sci U S A 1996 Jul 9;93(14):6913-7. PMID:8692918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (474 Kb) [Save to disk]
  • Biological Unit Coordinates (1cow.pdb1.gz) 464 Kb
  • LPC: Ligand-Protein Contacts for 1COW
  • CSU: Contacts of Structural Units for 1COW
  • Likely Quarternary Molecular Structure file(s) for 1COW
  • Structure Factors (607 Kb)
  • Retrieve 1COW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1COW from S2C, [Save to disk]
  • Re-refined 1cow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1COW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1COW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1COW, from MSDmotif at EBI
  • Genome occurence of 1COW's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cowa2, region A:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1cowa1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1cowa3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1cowb2, region B:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1cowb1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1cowb3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1cowc2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1cowc1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1cowc3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1cowd1, region D:358-475 [Jmol] [rasmolscript] [script source]
        - Domain d1cowd3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1cowd2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1cowe1, region E:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1cowe3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1cowe2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1cowf1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1cowf3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1cowf2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1cowg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cow_B] [1cow_F] [1cow_C] [1cow_E] [1cow_A] [1cow] [1cow_G] [1cow_D]
  • SWISS-PROT database: [P19483] [P00829] [P05631]
  • Domain organization of [ATPA_BOVIN] [ATPB_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1COW: [AAA ] by SMART
  • Other resources with information on 1COW
  • Community annotation for 1COW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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