1CP8 NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 date
authors Katahira, R., Katahira, M., Yamashita, Y., Ogawa, H., Kyogoku, Y., Yoshida, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DDA, DDL, DRI, DXA, MG enzyme
Primary referenceSolution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR., Katahira R, Katahira M, Yamashita Y, Ogawa H, Kyogoku Y, Yoshida M, Nucleic Acids Res 1998 Feb 1;26(3):744-55. PMID:9443966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1cp8.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1CP8
  • CSU: Contacts of Structural Units for 1CP8
  • Retrieve 1CP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CP8 from S2C, [Save to disk]
  • View 1CP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CP8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CP8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cp8] [1cp8_B] [1cp8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1CP8
  • Community annotation for 1CP8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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