1CQQ	Hydrolase	date	Aug 10, 1999
title	Type 2 Rhinovirus 3c Protease With Ag7088 Inhibitor
authors	D.Matthews, R.A.Ferre
compound		source
Molecule: Type 2 Rhinovirus 3c Protease Chain: A		Organism_scientific: Human Rhinovirus 2 Organism_taxid: 12130
symmetry	Space Group: P 21 21 21	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.300 65.700 77.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	AG7	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes., Matthews DA, Dragovich PS, Webber SE, Fuhrman SA, Patick AK, Zalman LS, Hendrickson TF, Love RA, Prins TJ, Marakovits JT, Zhou R, Tikhe J, Ford CE, Meador JW, Ferre RA, Brown EL, Binford SL, Brothers MA, DeLisle DM, Worland ST, Proc Natl Acad Sci U S A 1999 Sep 28;96(20):11000-7. PMID:10500114

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1cqq.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1CQQ CSU: Contacts of Structural Units for 1CQQ Likely Quarternary Molecular Structure file(s) for 1CQQ Retrieve 1CQQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CQQ from S2C, [Save to disk]

View 1CQQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CQQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CQQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cqqa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cqq] [1cqq_A] SWISS-PROT database: [P04936] Domain organization of [POLG_HRV2] by SWISSPFAM

Other resources with information on 1CQQ

Community annotation for 1CQQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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