1CVL Hydrolase date Jan 09, 1997
title Crystal Structure Of Bacterial Lipase From Chromobacterium Viscosum Atcc 6918
authors D.A.Lang, B.Hofmann, L.Haalck, H.J.Hecht, F.Spener, R.D.Schmid, D.Schomburg
compound source
Molecule: Triacylglycerol Hydrolase
Chain: A
Ec: 3.1.1.3
Other_details: Chain Break From V 220 - G 222
 Organism_scientific: Chromobacterium Viscosum
Organism_taxid: 42739
Atcc: 6918
symmetry Space Group: P 21 21 2
R_factor 0.178 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.080 156.820 43.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1QGE, 1YS2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a bacterial lipase from Chromobacterium viscosum ATCC 6918 refined at 1.6 angstroms resolution., Lang D, Hofmann B, Haalck L, Hecht HJ, Spener F, Schmid RD, Schomburg D, J Mol Biol 1996 Jun 21;259(4):704-17. PMID:8683577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1cvl.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1CVL
  • CSU: Contacts of Structural Units for 1CVL
  • Likely Quarternary Molecular Structure file(s) for 1CVL
  • Structure Factors (375 Kb)
  • Retrieve 1CVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CVL from S2C, [Save to disk]
  • Re-refined 1cvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CVL, from MSDmotif at EBI
  • Genome occurence of 1CVL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cvl__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cvl] [1cvl_A]
  • SWISS-PROT database: [Q05489]
  • Domain organization of [LIP_BURGL] by SWISSPFAM
    • Other resources with information on 1CVL
  • Community annotation for 1CVL at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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