1CZ5 Hydrolase date Sep 01, 1999
title Nmr Structure Of Vat-N: The N-Terminal Domain Of Vat (Vcp-Li Of Thermoplasma)
authors M.Coles, T.Diercks, J.Liermann, A.Groeger, B.Rockel, W.Baumeister K.Koretke, A.Lupas, J.Peters, H.Kessler
compound source
Molecule: Vcp-Like Atpase
Chain: A
Fragment: N-Terminal Domain: M1 To E183 Followed By A Digly Spacer;
Engineered: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
methodSolution NMR
related structures by homologous chain: 1CZ4, 1NE2
Primary referenceThe solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element., Coles M, Diercks T, Liermann J, Groger A, Rockel B, Baumeister W, Koretke KK, Lupas A, Peters J, Kessler H, Curr Biol 1999 Oct 21;9(20):1158-68. PMID:10531028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1238 Kb) [Save to disk]
  • Biological Unit Coordinates (1cz5.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1CZ5
  • Original NMR restraints for 1CZ5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1CZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CZ5 from S2C, [Save to disk]
    • View 1CZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CZ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cz5a1, region A:1-91 [Jmol] [rasmolscript] [script source]
        - Domain d1cz5a2, region A:92-185 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cz5_A] [1cz5]
  • SWISS-PROT database: [O05209]
  • Domain organization of [VAT_THEAC] by SWISSPFAM
  • Domains found in 1CZ5: [CDC48_2] [CDC48_N ] by SMART
    • Other resources with information on 1CZ5
  • Community annotation for 1CZ5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1CZ5 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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