1D0B Cell Adhesion date Sep 09, 1999
title Internalin B Leucine Rich Repeat Domain
authors M.Marino, L.Braun, P.Cossart, P.Ghosh
compound source
Molecule: Internalin B
Chain: A
Fragment: Lrr Domain, Residues 36-248
Engineered: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.410 56.920 84.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand CA enzyme
related structures by homologous chain: 1H6T, 1OTM
Primary referenceStructure of the lnlB leucine-rich repeats, a domain that triggers host cell invasion by the bacterial pathogen L. monocytogenes., Marino M, Braun L, Cossart P, Ghosh P, Mol Cell 1999 Dec;4(6):1063-72. PMID:10635330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1d0b.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1D0B
  • CSU: Contacts of Structural Units for 1D0B
  • Likely Quarternary Molecular Structure file(s) for 1D0B
  • Structure Factors (213 Kb)
  • Retrieve 1D0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D0B from S2C, [Save to disk]
  • Re-refined 1d0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D0B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D0B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d0ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d0b_A] [1d0b]
  • SWISS-PROT database: [P25147]
  • Domain organization of [INLB_LISMO] by SWISSPFAM
  • Domain found in 1D0B: [LRR ] by SMART
  • Other resources with information on 1D0B
  • Community annotation for 1D0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science