1D1U	Hydrolase Dna	date	Sep 21, 1999
title	Use Of An N-Terminal Fragment From Moloney Murine Leukemia V Reverse Transcriptase To Facilitate Crystallization And Ana Pseudo-16-Mer Dna Molecule Containing G-A Mispairs
authors	M.L.Cote, S.Yohannan, M.M.Georgiadis
compound		source
Molecule: Dna (5'-D(Cptpcpgptpg)-3') Chain: B Engineered: Yes Other_details: Synthetic		Synthetic: Yes
Molecule: Dna (5'-D(Apcpgpgpcpapcpgpapg)-3') Chain: C Engineered: Yes Other_details: Synthetic		Synthetic: Yes Other_details: The Sequence 5'-Ctcgtg-3' Was Synthesized On Applied Biosystems 392 Dnarna Synthesizer;
Molecule: Protein (Reverse Transcriptase) Chain: A Fragment: Fingers And Palm Domain Of Mmlv Rt Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Moloney Murine Leukemia Virus Organism_taxid: 11801 Gene: Mmlv Reverse Transcriptase Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_vector: Prt 107-3
symmetry	Space Group: P 21 21 2	R_factor 0.230 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.738 145.491 46.737 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1NND, 1QAI
Primary reference	Use of an N-terminal fragment from moloney murine leukemia virus reverse transcriptase to facilitate crystallization and analysis of a pseudo-16-mer DNA molecule containing G-A mispairs., Cote ML, Yohannan SJ, Georgiadis MM, Acta Crystallogr D Biol Crystallogr 2000 Sep;56 ( Pt 9):1120-31. PMID:10957631

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1d1u.pdb1.gz) 51 Kb CSU: Contacts of Structural Units for 1D1U Likely Quarternary Molecular Structure file(s) for 1D1U Structure Factors (195 Kb) Retrieve 1D1U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D1U from S2C, [Save to disk] Re-refined 1d1u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D1U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D1U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D1U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d1ua_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d1u_A] [1d1u_C] [1d1u_B] [1d1u] SWISS-PROT database: [P03355] Domain organization of [POL_MLVMO] by SWISSPFAM

Other resources with information on 1D1U

Community annotation for 1D1U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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