1D26 EFFECT OF A SINGLE 3'-METHYLENE PHOSPHONATE LINKAGE ON THE CONFORMATION OF AN A-DNA OCTAMER DOUBLE HELIX date
authors Heinemann, U.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.12
ligand G31 enzyme
Primary referenceEffect of a single 3'-methylene phosphonate linkage on the conformation of an A-DNA octamer double helix., Heinemann U, Rudolph LN, Alings C, Morr M, Heikens W, Frank R, Blocker H, Nucleic Acids Res 1991 Feb 11;19(3):427-33. PMID:2011517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (1d26.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1D26
  • CSU: Contacts of Structural Units for 1D26
  • Likely Quarternary Molecular Structure file(s) for 1D26
  • Structure Factors (10 Kb)
  • Retrieve 1D26 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D26 from S2C, [Save to disk]
  • Re-refined 1d26 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D26 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D26
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D26, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d26_A] [1d26]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1D26
  • Community annotation for 1D26 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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