1D2V	Oxidoreductase	date	Sep 28, 1999
title	Crystal Structure Of Bromide-Bound Human Myeloperoxidase Iso Ph 5.5
authors	T.J.Fiedler, C.A.Davey, R.E.Fenna
compound		source
Molecule: Myeloperoxidase Chain: A, B Fragment: Light Chain Ec: 1.11.1.7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Cell: Neutrophil
Molecule: Myeloperoxidase Chain: C, D Fragment: Heavy Chain Ec: 1.11.1.7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Cell: Neutrophil
symmetry	Space Group: P 1 21 1	R_factor 0.243 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.155 63.488 92.476 90.00 97.36 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	ACT, BMA, BR, CA, CSO, FUC, HEM, MAN, NAG, SO4	enzyme	Oxidoreductase E.C.1.11.1.7 BRENDA
related structures	by homologous chain: 1CXP
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	X-ray crystal structure and characterization of halide-binding sites of human myeloperoxidase at 1.8 A resolution., Fiedler TJ, Davey CA, Fenna RE, J Biol Chem 2000 Apr 21;275(16):11964-71. PMID:10766826

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (1d2v.pdb1.gz) 202 Kb Biological Unit Coordinates (1d2v.pdb2.gz) 104 Kb Biological Unit Coordinates (1d2v.pdb3.gz) 103 Kb LPC: Ligand-Protein Contacts for 1D2V CSU: Contacts of Structural Units for 1D2V Likely Quarternary Molecular Structure file(s) for 1D2V Structure Factors (772 Kb) Retrieve 1D2V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D2V from S2C, [Save to disk] Re-refined 1d2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D2V in 3D

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Visual 3D analysis of 1D2V

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D2V, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d2v.1, region A:,C [Jmol] [rasmolscript] [script source]     - Domain d1d2v.2, region B:,D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d2v] [1d2v_A] [1d2v_D] [1d2v_C] [1d2v_B] SWISS-PROT database: [P05164] Domain organization of [PERM_HUMAN] by SWISSPFAM

Other resources with information on 1D2V

Community annotation for 1D2V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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