1D40 BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 date
authors Geierstanger, B.H., Kagawa, T.F., Chen, S.L., Quigley, G.J., Ho, P.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand 5CM, CU, CUL enzyme
Primary referenceBase-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2., Geierstanger BH, Kagawa TF, Chen SL, Quigley GJ, Ho PS, J Biol Chem 1991 Oct 25;266(30):20185-91. PMID:1939079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1d40.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1D40
  • CSU: Contacts of Structural Units for 1D40
  • Likely Quarternary Molecular Structure file(s) for 1D40
  • Structure Factors (35 Kb)
  • Retrieve 1D40 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D40 from S2C, [Save to disk]
  • Re-refined 1d40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D40
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D40, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d40_B] [1d40] [1d40_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1D40
  • Community annotation for 1D40 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science