1D4C	Oxidoreductase	date	Oct 03, 1999
title	Crystal Structure Of The Uncomplexed Form Of The Flavocytoch Fumarate Reductase Of Shewanella Putrefaciens Strain Mr-1
authors	D.Leys, A.S.Tsapin, T.E.Meyer, M.A.Cusanovich, J.J.Van Beeumen
compound		source
Molecule: Flavocytochrome C Fumarate Reductase Chain: A, B, C, D Ec: 1.3.99.1		Organism_scientific: Shewanella Oneidensis Organism_taxid: 70863 Strain: Mr1
symmetry	Space Group: P 21 21 2	R_factor 0.210 R_Free 0.300
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.690 216.360 112.040 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	FAD, HEC, SO4	enzyme	Oxidoreductase E.C.1.3.99.1 BRENDA
related structures	by homologous chain: 1D4E
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1., Leys D, Tsapin AS, Nealson KH, Meyer TE, Cusanovich MA, Van Beeumen JJ, Nat Struct Biol 1999 Dec;6(12):1113-7. PMID:10581551

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk] Biological Unit Coordinates (1d4c.pdb1.gz) 92 Kb Biological Unit Coordinates (1d4c.pdb2.gz) 92 Kb Biological Unit Coordinates (1d4c.pdb3.gz) 92 Kb Biological Unit Coordinates (1d4c.pdb4.gz) 92 Kb LPC: Ligand-Protein Contacts for 1D4C CSU: Contacts of Structural Units for 1D4C Likely Quarternary Molecular Structure file(s) for 1D4C Retrieve 1D4C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D4C from S2C, [Save to disk]

View 1D4C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D4C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D4C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d4ca1, region A:1-102 [Jmol] [rasmolscript] [script source]     - Domain d1d4ca2, region A:103-359,A:506-570 [Jmol] [rasmolscript] [script source]     - Domain d1d4ca3, region A:360-505 [Jmol] [rasmolscript] [script source]     - Domain d1d4cb2, region B:103-359,B:506-570 [Jmol] [rasmolscript] [script source]     - Domain d1d4cb1, region B:3-102 [Jmol] [rasmolscript] [script source]     - Domain d1d4cb3, region B:360-505 [Jmol] [rasmolscript] [script source]     - Domain d1d4cc2, region C:103-359,C:506-570 [Jmol] [rasmolscript] [script source]     - Domain d1d4cc1, region C:3-102 [Jmol] [rasmolscript] [script source]     - Domain d1d4cc3, region C:360-505 [Jmol] [rasmolscript] [script source]     - Domain d1d4cd1, region D:1-102 [Jmol] [rasmolscript] [script source]     - Domain d1d4cd2, region D:103-359,D:506-570 [Jmol] [rasmolscript] [script source]     - Domain d1d4cd3, region D:360-505 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d4c_D] [1d4c] [1d4c_C] [1d4c_B] [1d4c_A] SWISS-PROT database: [P83223] Domain organization of [FRDA_SHEON] by SWISSPFAM

Other resources with information on 1D4C

Community annotation for 1D4C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---