1D5C	Endocytosis Exocytosis	date	Oct 06, 1999
title	Crystal Structure Of Plasmodium Falciparum Rab6 Complexed Wi
authors	D.Chattopadhyay, G.Langsley, M.Carson, R.Recacha, L.Delucas, C.Sm
compound		source
Molecule: Rab6 Gtpase Chain: A Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_common: Malaria Parasite P. Falciparum Organism_taxid: 5833 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet21
symmetry	Space Group: P 43 21 2	R_factor 0.214 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.200 81.200 90.840 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GDP, MG, MSE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the nucleotide-binding domain of Plasmodium falciparum rab6 in the GDP-bound form., Chattopadhyay D, Langsley G, Carson M, Recacha R, DeLucas L, Smith C, Acta Crystallogr D Biol Crystallogr 2000 Aug;56 ( Pt 8):937-44. PMID:10944329

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (1d5c.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 1D5C CSU: Contacts of Structural Units for 1D5C Likely Quarternary Molecular Structure file(s) for 1D5C Structure Factors (134 Kb) Retrieve 1D5C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D5C from S2C, [Save to disk] Re-refined 1d5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D5C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D5C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D5C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d5ca_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d5c] [1d5c_A] SWISS-PROT database: [Q26000] Domain organization of [Q26000_PLAFA] by SWISSPFAM Domain found in 1D5C: [RAB ] by SMART

Other resources with information on 1D5C

Community annotation for 1D5C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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