1D5F Ligase date Oct 07, 1999
title Structure Of E6ap: Insights Into Ubiquitination Pathway
authors L.Huang, E.Kinnucan, G.Wang, S.Beaudenon, P.M.Howley, J.M.Huibreg N.P.Pavletich
compound source
Molecule: E6ap Hect Catalytic Domain, E3 Ligase
Chain: A, B, C
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex4t-3
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.500 113.700 125.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Ligase E.C.6.3.2 BRENDA
related structures by homologous chain: 1C4Z
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade., Huang L, Kinnucan E, Wang G, Beaudenon S, Howley PM, Huibregtse JM, Pavletich NP, Science 1999 Nov 12;286(5443):1321-6. PMID:10558980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5f.pdb1.gz) 169 Kb
  • CSU: Contacts of Structural Units for 1D5F
  • Likely Quarternary Molecular Structure file(s) for 1D5F
  • Structure Factors (271 Kb)
  • Retrieve 1D5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5F from S2C, [Save to disk]
  • Re-refined 1d5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D5F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d5fb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1d5fc_, region C [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5f_A] [1d5f_B] [1d5f] [1d5f_C]
  • SWISS-PROT database: [Q05086]
  • Domain organization of [UBE3A_HUMAN] by SWISSPFAM
  • Domain found in 1D5F: [HECTc ] by SMART
  • Other resources with information on 1D5F
  • Community annotation for 1D5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science