1D6B Toxin date Oct 12, 1999
title Solution Structure Of Defensin-Like Peptide-2 (Dlp-2) From P Venom
authors A.M.Torres, G.M.De Plater, M.Doverskog, L.C Birinyi-Strachan, G.M.Nicholson, C.H.Gallagher, P.W.Kuchel
compound source
Molecule: Defensin-Like Peptide-2
Chain: A
Organism_scientific: Ornithorhynchus Anatinus
Organism_common: Platypus
Organism_taxid: 9258
Organ: Spur
Tissue: Venom Gland
Secretion: Venom
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


  • Primary referenceDefensin-like peptide-2 from platypus venom: member of a class of peptides with a distinct structural fold., Torres AM, de Plater GM, Doverskog M, Birinyi-Strachan LC, Nicholson GM, Gallagher CH, Kuchel PW, Biochem J 2000 Jun 15;348 Pt 3:649-56. PMID:10839998
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (1d6b.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1D6B
  • Original NMR restraints for 1D6B from PDB
  • Retrieve 1D6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D6B from S2C, [Save to disk]
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  • Visual 3D analysis of 1D6B
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D6B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d6ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d6b_A] [1d6b]
  • SWISS-PROT database: [P82140]
  • Domain organization of [DLP2_ORNAN] by SWISSPFAM
  • Other resources with information on 1D6B
  • Community annotation for 1D6B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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