1D76 Dna date May 19, 1992
title Crystal And Molecular Structure Of A Dna Fragment Containing Adenine Modification: The Relationship Between Conformation And Hydration In Z-Dna Hexamers
authors B.Schneider, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman
compound source
Molecule: Dna (5'-D(Cpgpup(1ap)Pcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.944 31.282 44.701 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 1AP enzyme
Primary referenceCrystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers., Schneider B, Ginell SL, Jones R, Gaffney B, Berman HM, Biochemistry 1992 Oct 13;31(40):9622-8. PMID:1390739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (1d76.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1D76
  • CSU: Contacts of Structural Units for 1D76
  • Likely Quarternary Molecular Structure file(s) for 1D76
  • Structure Factors (121 Kb)
  • Retrieve 1D76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D76 from S2C, [Save to disk]
  • Re-refined 1d76 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D76 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D76
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D76, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d76_A] [1d76] [1d76_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1D76
  • Community annotation for 1D76 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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