1D7I Isomerase date Oct 18, 1999
title Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide (Dss
authors P.Burkhard, P.Taylor, M.D.Walkinshaw
compound source
Molecule: Protein (Fk506-Binding Protein)
Chain: A, B
Synonym: Fkbp-12
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.800 36.450 56.000 90.00 96.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand DSS, NH4, SO4 enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1BL4, 1D7H
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-ray structures of small ligand-FKBP complexes provide an estimate for hydrophobic interaction energies., Burkhard P, Taylor P, Walkinshaw MD, J Mol Biol 2000 Jan 28;295(4):953-62. PMID:10656803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1d7i.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (1d7i.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (1d7i.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (1d7i.pdb4.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1D7I
  • CSU: Contacts of Structural Units for 1D7I
  • Likely Quarternary Molecular Structure file(s) for 1D7I
  • Structure Factors (104 Kb)
  • Retrieve 1D7I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D7I from S2C, [Save to disk]
  • Re-refined 1d7i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D7I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D7I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D7I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d7ia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d7ib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d7i_A] [1d7i_B] [1d7i]
  • SWISS-PROT database: [P62942]
  • Belongs to the immunophilin-like prolyl:peptidyl isomerase regulator (i-ppi) family according to TCDB.
  • Domain organization of [FKB1A_HUMAN] by SWISSPFAM
  • Other resources with information on 1D7I
  • Community annotation for 1D7I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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