1D8C	Lyase	date	Oct 22, 1999
title	Malate Synthase G Complexed With Magnesium And Glyoxylate
authors	B.R.Howard, J.A.Endrizzi, S.J.Remington
compound		source
Molecule: Malate Synthase G Chain: A Ec: 4.1.3.2 Engineered: Yes Mutation: Yes Other_details: C-Terminal His-Tag (724-731)		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet-28b
symmetry	Space Group: P 21 21 21	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.800 88.700 109.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GLV, MG, MSE, SO4, SOR	enzyme	Lyase E.C.4.1.3.2 BRENDA
related structures	by homologous chain: 1P7T, 1Y8B
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 A resolution: mechanistic implications., Howard BR, Endrizzi JA, Remington SJ, Biochemistry 2000 Mar 21;39(11):3156-68. PMID:10715138

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (1d8c.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 1D8C CSU: Contacts of Structural Units for 1D8C Likely Quarternary Molecular Structure file(s) for 1D8C Structure Factors (368 Kb) Retrieve 1D8C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D8C from S2C, [Save to disk] Re-refined 1d8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1D8C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D8C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D8C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d8ca_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d8c] [1d8c_A] SWISS-PROT database: [P37330] Domain organization of [MASZ_ECOLI] by SWISSPFAM

Other resources with information on 1D8C

Community annotation for 1D8C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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