1D9J Antimicrobial Protein date Oct 28, 1999
title Solution Structure Of Cecropin A(1-8)-Magainin 2(1-12) Hybri
authors D.Oh, Y.Kim
compound source
Molecule: Cecropin A-Magainin 2 Hybrid Peptide
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The For This Peptide Is A Hybrid Of Sequences Which Occur Natur Hyalophora Cecropia (Cecropia Moth) And Xenopus Laevis (Afr Clawed Frog)
methodSolution NMR
ligand NH2 enzyme
Primary referenceNMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides., Oh D, Shin SY, Kang JH, Hahm KS, Kim KL, Kim Y, J Pept Res 1999 May;53(5):578-89. PMID:10424354
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1d9j.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1D9J
  • CSU: Contacts of Structural Units for 1D9J
  • Original NMR restraints for 1D9J from PDB
  • Retrieve 1D9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D9J from S2C, [Save to disk]
    • View 1D9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d9ja_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d9j_A] [1d9j]
  • SWISS-PROT database: [P01507] [P11006]
  • Belongs to the magainin (magainin) family according to TCDB.
  • Belongs to the cecropin (cecropin) family according to TCDB.
  • Domain organization of [CECA_HYACE] [MAGA_XENLA] by SWISSPFAM
    • Other resources with information on 1D9J
  • Community annotation for 1D9J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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