1DAB Cell Adhesion date Oct 31, 1999
title The Structure Of Bordetella Pertussis Virulence Factor P.69
authors P.Emsley, I.G.Charles, N.F.Fairweather, N.W.Isaacs
compound source
Molecule: P.69 Pertactin
Chain: A
Engineered: Yes
 Organism_scientific: Bordetella Pertussis
Organism_taxid: 520
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: M13mp18
symmetry Space Group: P 63 2 2
R_factor 0.250 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.199 176.199 104.688 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Bordetella pertussis virulence factor P.69 pertactin., Emsley P, Charles IG, Fairweather NF, Isaacs NW, Nature 1996 May 2;381(6577):90-2. PMID:8609998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1dab.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (1dab.pdb2.gz) 475 Kb
  • CSU: Contacts of Structural Units for 1DAB
  • Likely Quarternary Molecular Structure file(s) for 1DAB
  • Retrieve 1DAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DAB from S2C, [Save to disk]
    • View 1DAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DAB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DAB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1daba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dab] [1dab_A]
  • SWISS-PROT database: [P14283]
  • Belongs to the autotransporter-1 (at-1) family according to TCDB.
  • Domain organization of [PERT_BORPE] by SWISSPFAM
    • Other resources with information on 1DAB
  • Community annotation for 1DAB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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