1DBF	Isomerase	date	Nov 02, 1999
title	Chorismate Mutase From Bacillus Subtilis At 1.30 Angstrom
authors	G.L.Gilliland, J.E.Ladner
compound		source
Molecule: Protein (Chorismate Mutase) Chain: A, B, C Ec: 5.4.99.5 Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Mz1 Expression_system_plasmid: Pre1-Aroq
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.200 83.770 85.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	GOL, SO4	enzyme	Isomerase E.C.5.4.99.5 BRENDA
related structures	by homologous chain: 2CHS
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The 1.30 A resolution structure of the Bacillus subtilis chorismate mutase catalytic homotrimer., Ladner JE, Reddy P, Davis A, Tordova M, Howard AJ, Gilliland GL, Acta Crystallogr D Biol Crystallogr 2000 Jun;56 ( Pt 6):673-83. PMID:10818343

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk] Biological Unit Coordinates (1dbf.pdb1.gz) 146 Kb LPC: Ligand-Protein Contacts for 1DBF CSU: Contacts of Structural Units for 1DBF Likely Quarternary Molecular Structure file(s) for 1DBF Structure Factors (678 Kb) Retrieve 1DBF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DBF from S2C, [Save to disk] Re-refined 1dbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DBF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DBF

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1DBF 1DBFA 1DBFB 1DBFC from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DBF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dbfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dbfb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1dbfc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dbf_A] [1dbf_C] [1dbf_B] [1dbf] SWISS-PROT database: [P19080] Domain organization of [CHMU_BACSU] by SWISSPFAM

Other resources with information on 1DBF

Community annotation for 1DBF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---