1DBP Binding Protein date Jan 31, 1994
title Identical Mutations At Corresponding Positions In Two Homolo Proteins With Non-Identical Effects
authors S.L.Mowbray, A.J.Joakim Bjorkman
compound source
Molecule: D-Ribose-Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.160 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.840 88.880 39.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand RIP enzyme
related structures by homologous chain: 1BA2, 1URP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentical mutations at corresponding positions in two homologous proteins with nonidentical effects., Bjorkman AJ, Binnie RA, Cole LB, Zhang H, Hermodson MA, Mowbray SL, J Biol Chem 1994 Apr 15;269(15):11196-200. PMID:8157648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1dbp.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1DBP
  • CSU: Contacts of Structural Units for 1DBP
  • Likely Quarternary Molecular Structure file(s) for 1DBP
  • Structure Factors (135 Kb)
  • Retrieve 1DBP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DBP from S2C, [Save to disk]
  • Re-refined 1dbp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DBP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DBP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DBP, from MSDmotif at EBI
  • Genome occurence of 1DBP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dbp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dbp] [1dbp_A]
  • SWISS-PROT database: [P02925]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [RBSB_ECOLI] by SWISSPFAM
  • Other resources with information on 1DBP
  • Community annotation for 1DBP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DBP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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