1DC7 Signaling Protein date Nov 04, 1999
title Structure Of A Transiently Phosphorylated "Switch" In Bacter Transduction
authors D.Kern, B.F.Volkman, P.Luginbuhl, M.J.Nohaile, S.Kustu, D.E.Wemme
compound source
Molecule: Nitrogen Regulation Protein
Chain: A
Fragment: N-Terminal Receiver Domain(1-124)
Synonym: Ntrc
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium
Organism_taxid: 602
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pjes592
methodSolution NMR
related structures by homologous chain: 1DC8, 1J56
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a transiently phosphorylated switch in bacterial signal transduction., Kern D, Volkman BF, Luginbuhl P, Nohaile MJ, Kustu S, Wemmer DE, Nature 1999 Dec 23-30;402(6764):894-8. PMID:10622255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1dc7.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1DC7
  • Original NMR restraints for 1DC7 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DC7 from S2C, [Save to disk]
    • View 1DC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DC7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DC7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dc7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dc7] [1dc7_A]
  • SWISS-PROT database: [P41789]
  • Domain organization of [NTRC_SALTY] by SWISSPFAM
  • Domain found in 1DC7: [REC ] by SMART
    • Other resources with information on 1DC7
  • Community annotation for 1DC7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1DC7 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science