1DCE	Transferase	date	Nov 04, 1999
title	Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain
authors	H.Zhang, M.C.Seabra, H.Deisenhofer
compound		source
Molecule: Protein (Rab Geranylgeranyltransferase Alpha Subunit); Chain: A, C Ec: 2.5.1.-		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116
Molecule: Protein (Rab Geranylgeranyltransferase Beta Subunit); Chain: B, D Ec: 2.5.1.-		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116
symmetry	Space Group: P 1	R_factor 0.215 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.864 77.439 121.775 74.60 79.91 67.89
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FME, ZN	enzyme	Transferase E.C.2.5.1 BRENDA
related structures	by homologous chain: 1LTX
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Crystal structure of Rab geranylgeranyltransferase at 2.0 A resolution., Zhang H, Seabra MC, Deisenhofer J, Structure Fold Des 2000 Mar 15;8(3):241-51. PMID:10745007

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk] Biological Unit Coordinates (1dce.pdb1.gz) 152 Kb Biological Unit Coordinates (1dce.pdb2.gz) 152 Kb LPC: Ligand-Protein Contacts for 1DCE CSU: Contacts of Structural Units for 1DCE Likely Quarternary Molecular Structure file(s) for 1DCE Retrieve 1DCE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DCE from S2C, [Save to disk]

View 1DCE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DCE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DCE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dcea1, region A:1-241,A:351-443 [Jmol] [rasmolscript] [script source]     - Domain d1dcea2, region A:242-350 [Jmol] [rasmolscript] [script source]     - Domain d1dcea3, region A:444-567 [Jmol] [rasmolscript] [script source]     - Domain d1dceb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1dcec1, region C:1-241,C:351-443 [Jmol] [rasmolscript] [script source]     - Domain d1dcec2, region C:242-350 [Jmol] [rasmolscript] [script source]     - Domain d1dcec3, region C:444-567 [Jmol] [rasmolscript] [script source]     - Domain d1dced_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dce_B] [1dce] [1dce_A] [1dce_D] [1dce_C] SWISS-PROT database: [Q08602] [Q08603] Domain organization of [PGTA_RAT] [PGTB2_RAT] by SWISSPFAM Domain found in 1DCE: [LRR ] by SMART

Other resources with information on 1DCE

Community annotation for 1DCE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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