1DCY	Hydrolase Hydrolase Inhibitor	date	Nov 05, 1999
title	Crystal Structure Of Human S-Pla2 In Complex With Indole 3 Active Site Inhibitor
authors	N.Y.Chirgadze, R.W.Schevitz, J.P.Wery
compound		source
Molecule: Phospholipase A2 Chain: A Synonym: Hnp-Spla2 Ec: 3.1.1.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 61 2 2	R_factor 0.218 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.254 76.254 91.465 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CA, I3N BindingDB	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
related structures	by homologous chain: 1DB5, 1N29
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based design of the first potent and selective inhibitor of human non-pancreatic secretory phospholipase A2., Schevitz RW, Bach NJ, Carlson DG, Chirgadze NY, Clawson DK, Dillard RD, Draheim SE, Hartley LW, Jones ND, Mihelich ED, et al., Nat Struct Biol 1995 Jun;2(6):458-65. PMID:7664108

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (1dcy.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 1DCY CSU: Contacts of Structural Units for 1DCY Likely Quarternary Molecular Structure file(s) for 1DCY Retrieve 1DCY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DCY from S2C, [Save to disk]

View 1DCY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DCY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DCY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dcya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dcy] [1dcy_A] SWISS-PROT database: [P14555] Domain organization of [PA2GA_HUMAN] by SWISSPFAM Domain found in 1DCY: [PA2c ] by SMART

Other resources with information on 1DCY

Community annotation for 1DCY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---