1DD8 Transferase date Nov 09, 1999
title Crystal Structure Of Beta-Ketoacyl-[Acyl Carrier Protein] Sy From Escherichia Coli
authors J.G.Olsen, A.Kadziola, P.Von Wettstein-Knowles, M.Siggaard-Ande Y.Lindquist, S.Larsen
compound source
Molecule: Beta-Ketoacyl [Acyl Carrier Protein] Synthase I
Chain: A, B, C, D
Ec: 2.3.1.41
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.620 142.710 213.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Transferase E.C.2.3.1.41 BRENDA
related structures by homologous chain: 1FJ4, 1FJ8
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe X-ray crystal structure of beta-ketoacyl [acyl carrier protein] synthase I., Olsen JG, Kadziola A, von Wettstein-Knowles P, Siggaard-Andersen M, Lindquist Y, Larsen S, FEBS Lett 1999 Oct 22;460(1):46-52. PMID:10571059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (1dd8.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (1dd8.pdb2.gz) 125 Kb
  • CSU: Contacts of Structural Units for 1DD8
  • Likely Quarternary Molecular Structure file(s) for 1DD8
  • Structure Factors (693 Kb)
  • Retrieve 1DD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DD8 from S2C, [Save to disk]
  • Re-refined 1dd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DD8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DD8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dd8a1, region A:1-253 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8a2, region A:254-406 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8b1, region B:1-253 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8b2, region B:254-406 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8c1, region C:1-253 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8c2, region C:254-406 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8d1, region D:1-253 [Jmol] [rasmolscript] [script source]
        - Domain d1dd8d2, region D:254-406 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dd8_A] [1dd8_D] [1dd8] [1dd8_B] [1dd8_C]
  • SWISS-PROT database: [P0A953]
  • Domain organization of [FABB_ECOLI] by SWISSPFAM
    • Other resources with information on 1DD8
  • Community annotation for 1DD8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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