1DFE Ribosome date Nov 19, 1999
title Nmr Structure Of Ribosomal Protein L36 From Thermus Thermoph
authors T.Hard, A.Rak, P.Allard, L.Kloo, M.Garber
compound source
Molecule: L36 Ribosomal Protein
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1DGZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold., Hard T, Rak A, Allard P, Kloo L, Garber M, J Mol Biol 2000 Feb 11;296(1):169-80. PMID:10656825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1dfe.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1DFE
  • CSU: Contacts of Structural Units for 1DFE
  • Retrieve 1DFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DFE from S2C, [Save to disk]
    • View 1DFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DFE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DFE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dfea_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dfe_A] [1dfe]
  • SWISS-PROT database: [P80256]
  • Domain organization of [RL36_THETH] by SWISSPFAM
    • Other resources with information on 1DFE
  • Community annotation for 1DFE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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