1DJF De Novo Protein date Dec 03, 1999
title Nmr Structure Of A Model Hydrophilic Amphipathic Helical Bas
authors R.Montserret, M.J.Mcleish, A.Bockmann, C.Geourjon, F.Penin
compound source
Molecule: Gln-Ala-Pro-Ala-Tyr-Lys-Lys-Ala-Ala-Lys-Lys-Leu-A Ser;
Chain: A
Fragment: Human Platelet Factor 4, Segment 56-70
Engineered: Yes
Mutation: Yes
Other_details: Chemically Synthesized
 Synthetic: Yes
Other_details: This Model Peptide Was Chemically Synthesize
methodSolution NMR
Primary referenceInvolvement of electrostatic interactions in the mechanism of peptide folding induced by sodium dodecyl sulfate binding., Montserret R, McLeish MJ, Bockmann A, Geourjon C, Penin F, Biochemistry 2000 Jul 25;39(29):8362-73. PMID:10913242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (1djf.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1DJF
  • Original NMR restraints for 1DJF from PDB
  • Retrieve 1DJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJF from S2C, [Save to disk]
    • View 1DJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DJF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DJF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1djfa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1djf] [1djf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DJF
  • Community annotation for 1DJF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science