1DJG Lipid Degradation date Sep 25, 1996
title Phosphoinositide-Specific Phospholipase C-Delta1 From Rat Co With Lanthanum
authors L.O.Essen, O.Perisic, R.L.Williams
compound source
Molecule: Phosphoinositide-Specific Phospholipase C, Isozym
Chain: A, B
Synonym: Plc-D1
Ec: 3.1.4.11
Engineered: Yes
Mutation: Yes
Other_details: Catalytically-Active Deletion Variant That L Terminal Ph Domain, Complexed With Lanthanum
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Cdna Fragment
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex (Pharmacia)
Expression_system_gene: Cdna Fragment
symmetry Space Group: F 41 3 2
R_factor 0.210 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
397.920 397.920 397.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ACT, LA enzyme Hydrolase E.C.3.1.4.11 BRENDA
related structures by homologous chain: 1DJY, 2ISD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1., Essen LO, Perisic O, Lynch DE, Katan M, Williams RL, Biochemistry 1997 Mar 11;36(10):2753-62. PMID:9062102
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (1djg.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (1djg.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1DJG
  • CSU: Contacts of Structural Units for 1DJG
  • Likely Quarternary Molecular Structure file(s) for 1DJG
  • Retrieve 1DJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJG from S2C, [Save to disk]
  • View 1DJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DJG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DJG, from MSDmotif at EBI
  • Genome occurence of 1DJG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1djga1, region A:200-298 [Jmol] [rasmolscript] [script source]
        - Domain d1djga3, region A:299-625 [Jmol] [rasmolscript] [script source]
        - Domain d1djga2, region A:626-756 [Jmol] [rasmolscript] [script source]
        - Domain d1djgb1, region B:158-298 [Jmol] [rasmolscript] [script source]
        - Domain d1djgb3, region B:299-625 [Jmol] [rasmolscript] [script source]
        - Domain d1djgb2, region B:626-756 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1djg] [1djg_B] [1djg_A]
  • SWISS-PROT database: [P10688]
  • Domain organization of [PLCD1_RAT] by SWISSPFAM
  • Domains found in 1DJG: [C2] [EFh] [PLCXc] [PLCYc ] by SMART
  • Other resources with information on 1DJG
  • Community annotation for 1DJG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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