1DL4 Dna date Dec 08, 1999
title The Solution Structure Of A Bay-Region 1s-Benz[A]Anthracene Adduct At The N6 Position Of Adenine Of An Oligodeoxynucleo Containing The Human N-Ras Codon 61 Sequence
authors Z.Li, H.Y.Kim, P.J.Tamura, C.M.Harris, T.M.Harris, M.P.Stone
compound source
Molecule: Dna (5'-D(Cpgpgpapcp(Bza)Apapgpapapg)-
Chain: A
Engineered: Yes
Other_details: Benz[A]Anthracene-Modified Adenine-6
 Synthetic: Yes
Other_details: This Sequence Was Synthesized By Chemical Me

Molecule: Dna (5'-D(Cptptpcptptpgptpcpcpg)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Was Synthesized By Chemical Me
methodSolution NMR
ligand BZA enzyme
Primary referenceIntercalation of the (1S,2R,3S,4R)-N6-[1-(1,2,3,4-tetrahydro-2,3, 4-trihydroxybenz[a]anthracenyl)]-2'-deoxyadenosyl adduct in an oligodeoxynucleotide containing the human N-ras codon 61 sequence., Li Z, Kim HY, Tamura PJ, Harris CM, Harris TM, Stone MP, Biochemistry 1999 Dec 7;38(49):16045-57. PMID:10587427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1dl4.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1DL4
  • CSU: Contacts of Structural Units for 1DL4
  • Original NMR restraints for 1DL4 from PDB
  • Retrieve 1DL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DL4 from S2C, [Save to disk]
    • View 1DL4 in 3D
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    • Visual 3D analysis of 1DL4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DL4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dl4_B] [1dl4_A] [1dl4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DL4
  • Community annotation for 1DL4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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