1DLI	Oxidoreductase	date	Dec 09, 1999
title	The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Re Catalytic Residues Necessary For The Two-Fold Oxidation
authors	R.E.Campbell, S.C.Mosimann, I.Van De Rijn, M.E.Tanner, N.C.J.Str
compound		source
Molecule: Udp-Glucose Dehydrogenase Chain: A Ec: 1.1.1.22 Engineered: Yes		Organism_scientific: Streptococcus Pyogenes Organism_taxid: 1314 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pgac147
symmetry	Space Group: P 4 21 2	R_factor 0.186 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.601 106.601 81.592 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.31 Å
ligand	GOL, NAD, SO4, UDX	enzyme	Oxidoreductase E.C.1.1.1.22 BRENDA
related structures	by homologous chain: 1DLJ
Gene Ontology	Chain Function Process Component A
Primary reference	The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation., Campbell RE, Mosimann SC, van De Rijn I, Tanner ME, Strynadka NC, Biochemistry 2000 Jun 13;39(23):7012-23. PMID:10841783

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1dli.pdb1.gz) 142 Kb LPC: Ligand-Protein Contacts for 1DLI CSU: Contacts of Structural Units for 1DLI Likely Quarternary Molecular Structure file(s) for 1DLI Retrieve 1DLI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DLI from S2C, [Save to disk]

View 1DLI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DLI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DLI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dlia2, region A:1-196 [Jmol] [rasmolscript] [script source]     - Domain d1dlia1, region A:197-294 [Jmol] [rasmolscript] [script source]     - Domain d1dlia3, region A:295-402 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dli] [1dli_A] SWISS-PROT database: [P0C0F4] Domain organization of [UDG_STRPY] by SWISSPFAM Domain found in 1DLI: [UDPG_MGDP_dh_C ] by SMART

Other resources with information on 1DLI

Community annotation for 1DLI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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