1DMA DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH NICOTINAMIDE AND AMP date
authors Li, M., Dyda, F., Benhar, I., Pastan, I., Davies, D.
compound source
symmetry
R_factor
R_Free 0.2650000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand AMP, NCA enzyme
related structures by homologous chain: 1ZM4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of Pseudomonas aeruginosa exotoxin domain III with nicotinamide and AMP: conformational differences with the intact exotoxin., Li M, Dyda F, Benhar I, Pastan I, Davies DR, Proc Natl Acad Sci U S A 1995 Sep 26;92(20):9308-12. PMID:7568123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1dma.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 1DMA
  • CSU: Contacts of Structural Units for 1DMA
  • Likely Quarternary Molecular Structure file(s) for 1DMA
  • Retrieve 1DMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMA from S2C, [Save to disk]
  • View 1DMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DMA, from MSDmotif at EBI
  • Genome occurence of 1DMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dmab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dma] [1dma_A] [1dma_B]
  • SWISS-PROT database: [P11439]
  • Belongs to the pseudomonas exotoxin a (p-exoa) family according to TCDB.
  • Domain organization of [TOXA_PSEAE] by SWISSPFAM
  • Other resources with information on 1DMA
  • Community annotation for 1DMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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