1DMM Isomerase date Dec 14, 1999
title Crystal Structures Of Mutant Enzymes Y57f Of Ketosteroid Iso From Pseudomonas Putida Biotype B
authors D.H.Kim, D.S.Jang, G.H.Nam, B.H.Oh, K.Y.Choi
compound source
Molecule: Steroid Delta-Isomerase
Chain: A
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pkk223-3
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.090 95.980 74.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Isomerase E.C.5.3.3.1 BRENDA
related structures by homologous chain: 1EA2, 1OHO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceContribution of the hydrogen-bond network involving a tyrosine triad in the active site to the structure and function of a highly proficient ketosteroid isomerase from Pseudomonas putida biotype B., Kim DH, Jang DS, Nam GH, Choi G, Kim JS, Ha NC, Kim MS, Oh BH, Choi KY, Biochemistry 2000 Apr 25;39(16):4581-9. PMID:10769113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1dmm.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1DMM
  • Likely Quarternary Molecular Structure file(s) for 1DMM
  • Structure Factors (80 Kb)
  • Retrieve 1DMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMM from S2C, [Save to disk]
  • Re-refined 1dmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DMM in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DMM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dmm] [1dmm_A]
  • SWISS-PROT database: [P07445]
  • Domain organization of [SDIS_PSEPU] by SWISSPFAM
  • Other resources with information on 1DMM
  • Community annotation for 1DMM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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