1DMU	Hydrolase Dna	date	Dec 15, 1999
title	Crystal Structure Of The Restriction Endonuclease Bgli (E.C. Bound To Its Dna Recognition Sequence
authors	M.Newman, K.Lunnen, G.Wilson, J.Greci, I.Schildkraut, S.E.V.Phill
compound		source
Molecule: Dna (5'- D(Aptpcpgpcpcptpapaptpapgpgpcpgpapt)-3'); Chain: F Engineered: Yes		Synthetic: Yes Other_details: Contains Dna Recognition Sequence Of Bgli
Molecule: Bgli Restriction Endonuclease Chain: A Ec: 3.1.21.4 Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.177 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.480 81.600 117.060 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	BME, CA	enzyme	Hydrolase E.C.3.1.21.4 BRENDA
Gene Ontology	Chain Function Process Component A nuclease activity endonuclease activity
Primary reference	Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence., Newman M, Lunnen K, Wilson G, Greci J, Schildkraut I, Phillips SE, EMBO J 1998 Sep 15;17(18):5466-76. PMID:9736624

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (1dmu.pdb1.gz) 118 Kb LPC: Ligand-Protein Contacts for 1DMU CSU: Contacts of Structural Units for 1DMU Likely Quarternary Molecular Structure file(s) for 1DMU Structure Factors (131 Kb) Retrieve 1DMU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DMU from S2C, [Save to disk] Re-refined 1dmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DMU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DMU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DMU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dmua_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dmu_A] [1dmu] [1dmu_F] SWISS-PROT database: [O68557] Domain organization of [T2B1_BACSU] by SWISSPFAM

Other resources with information on 1DMU

Community annotation for 1DMU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---