1DMX Lyase (Oxo-Acid) date Oct 04, 1995
title Murine Mitochondrial Carbonic Anyhdrase V At 2.45 Angstroms
authors P.A.Boriack-Sjodin, D.W.Christianson
compound source
Molecule: Murine Carbonic Anhydrase V
Chain: A, B
Synonym: Carbonate Dehydrogenase, Mcavc
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbcj
Cell_line: Bl21
Organ: Liver
Organelle: Mitochondria
Gene: Mca5c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet31 T7
Expression_system_gene: Mca5c
Other_details: Truncated Version Of Protein With 21 N Termi Residues Removed (See Heck Et Al., Jbc, Vol 269 (1994) Pp 2 24746)
symmetry Space Group: P 1
R_factor 0.168 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.690 60.370 60.440 67.65 75.26 75.21
method X-Ray Diffractionresolution 2.45 Å
ligand ZN enzyme Lyase E.C.4.2.1.1 BRENDA
related structures by homologous chain: 1DMY, 1KEQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure determination of murine mitochondrial carbonic anhydrase V at 2.45-A resolution: implications for catalytic proton transfer and inhibitor design., Boriack-Sjodin PA, Heck RW, Laipis PJ, Silverman DN, Christianson DW, Proc Natl Acad Sci U S A 1995 Nov 21;92(24):10949-53. PMID:7479916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1dmx.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 1DMX
  • CSU: Contacts of Structural Units for 1DMX
  • Likely Quarternary Molecular Structure file(s) for 1DMX
  • Retrieve 1DMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMX from S2C, [Save to disk]
  • View 1DMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DMX, from MSDmotif at EBI
  • Genome occurence of 1DMX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dmxb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dmx_A] [1dmx] [1dmx_B]
  • SWISS-PROT database: [P23589]
  • Domain organization of [CAH5A_MOUSE] by SWISSPFAM
  • Domain found in 1DMX: [Carb_anhydrase ] by SMART
  • Other resources with information on 1DMX
  • Community annotation for 1DMX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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