1DN8 Dna date May 12, 1987
title Structure Of A Z-Dna With Two Different Backbone Chain Confo Stabilization Of The Decadeoxyoligonucleotide D(Cgtacgtacg) (Co(Nh3)6)3+ Binding To The Guanine
authors R.G.Brennan, E.Westhof, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Pcpgptpapcpgptpapcpg)-3')
Chain: A, B
Engineered: Yes
symmetry Space Group: P 65
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.930 17.930 43.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand NCO enzyme
Primary referenceStructure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine., Brennan RG, Westhof E, Sundaralingam M, J Biomol Struct Dyn 1986 Feb;3(4):649-65. PMID:3271042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (1dn8.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1DN8
  • CSU: Contacts of Structural Units for 1DN8
  • Likely Quarternary Molecular Structure file(s) for 1DN8
  • Retrieve 1DN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DN8 from S2C, [Save to disk]
    • View 1DN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DN8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DN8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dn8] [1dn8_B] [1dn8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DN8
  • Community annotation for 1DN8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science