1DNF EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) date
authors Coll, M., Saal, D., Frederick, C.A., Aymami, J., Rich, A., Wang, A.H.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand MG, UFP enzyme
Primary referenceEffects of 5-fluorouracil/guanine wobble base pairs in Z-DNA: molecular and crystal structure of d(CGCGFG)., Coll M, Saal D, Frederick CA, Aymami J, Rich A, Wang AH, Nucleic Acids Res 1989 Feb 11;17(3):911-23. PMID:2922276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1dnf.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1DNF
  • CSU: Contacts of Structural Units for 1DNF
  • Likely Quarternary Molecular Structure file(s) for 1DNF
  • Retrieve 1DNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DNF from S2C, [Save to disk]
    • View 1DNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DNF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DNF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dnf_B] [1dnf] [1dnf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DNF
  • Community annotation for 1DNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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