1DRJ Sugar Transport date Sep 23, 1994
title Probing Protein-Protein Interactions: The Ribose-Binding Pro Bacterial Transport And Chemotaxis
authors S.L.Mowbray, A.J.Bjorkman, L.B.Cole
compound source
Molecule: D-Ribose-Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system_vector_type: Bacterial
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.910 90.080 39.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand RIP enzyme
related structures by homologous chain: 1URP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis., Bjorkman AJ, Binnie RA, Zhang H, Cole LB, Hermodson MA, Mowbray SL, J Biol Chem 1994 Dec 2;269(48):30206-11. PMID:7982928
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1drj.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1DRJ
  • CSU: Contacts of Structural Units for 1DRJ
  • Likely Quarternary Molecular Structure file(s) for 1DRJ
  • Structure Factors (72 Kb)
  • Retrieve 1DRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DRJ from S2C, [Save to disk]
  • Re-refined 1drj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DRJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DRJ, from MSDmotif at EBI
  • Genome occurence of 1DRJ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1drj__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1drj] [1drj_A]
  • SWISS-PROT database: [P02925]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [RBSB_ECOLI] by SWISSPFAM
  • Other resources with information on 1DRJ
  • Community annotation for 1DRJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DRJ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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