1DS5 Transferase date Jan 07, 2000
title Dimeric Crystal Structure Of The Alpha Subunit In Complex Wi Beta Peptides Mimicking The Architecture Of The Tetrameric Kinase Ck2 Holoenzyme.
authors R.Battistutta, S.Sarno, E.De Moliner, O.Marin, G.Zanotti, L.A.Pin
compound source
Molecule: Casein Kinase, Alpha Chain
Chain: A, B, C, D
Synonym: Ck2
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Zea Mays
Organism_taxid: 4577
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Casein Kinase, Beta Chain
Chain: E, F, G, H
Fragment: Residues 181-203
Synonym: Ck2
Ec: 2.7.1.37
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide Corresponding To The Seque 203 Of The Beta-Subunit Of Human Protein Kinase Ck2.
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.681 119.846 145.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.16 Å
ligand AMP, MG enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of the complex of Zea mays alpha subunit with a fragment of human beta subunit provides the clue to the architecture of protein kinase CK2 holoenzyme., Battistutta R, Sarno S, De Moliner E, Marin O, Issinger OG, Zanotti G, Pinna LA, Eur J Biochem 2000 Aug;267(16):5184-90. PMID:10931203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (1ds5.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (1ds5.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1DS5
  • CSU: Contacts of Structural Units for 1DS5
  • Likely Quarternary Molecular Structure file(s) for 1DS5
  • Retrieve 1DS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DS5 from S2C, [Save to disk]
  • View 1DS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DS5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DS5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ds5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ds5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ds5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ds5d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ds5_E] [1ds5_A] [1ds5_G] [1ds5_D] [1ds5_F] [1ds5] [1ds5_C] [1ds5_B] [1ds5_H]
  • SWISS-PROT database: [P28523] [P67870]
  • Domain organization of [CSK2A_MAIZE] [CSK2B_HUMAN] by SWISSPFAM
  • Domain found in 1DS5: [S_TKc ] by SMART
  • Other resources with information on 1DS5
  • Community annotation for 1DS5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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