1DT0 Oxidoreductase date Jan 10, 2000
title Cloning, Sequence, And Crystallographic Structure Of Recombi Superoxide Dismutase From Pseudomonas Ovalis
authors C.J.Bond, J.Huang, R.Hajduk, K.Flick, P.Heath, B.L.Stoddard
compound source
Molecule: Superoxide Dismutase
Chain: A, B, C
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
Expression_system_gene: Pseudomonas Ovalis Chromosomal Plas Library
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.030 115.030 82.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1ISB, 3SDP
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • superoxide dismutase activit...


    • Primary referenceCloning, sequence and crystallographic structure of recombinant iron superoxide dismutase from Pseudomonas ovalis., Bond CJ, Huang J, Hajduk R, Flick KE, Heath PJ, Stoddard BL, Acta Crystallogr D Biol Crystallogr 2000 Nov;56 ( Pt 11):1359-66. PMID:11053832
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1dt0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1dt0.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1DT0
  • CSU: Contacts of Structural Units for 1DT0
  • Likely Quarternary Molecular Structure file(s) for 1DT0
  • Retrieve 1DT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DT0 from S2C, [Save to disk]
    • View 1DT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DT0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DT0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dt0a1, region A:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1dt0a2, region A:84-197 [Jmol] [rasmolscript] [script source]
        - Domain d1dt0b1, region B:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1dt0b2, region B:84-197 [Jmol] [rasmolscript] [script source]
        - Domain d1dt0c1, region C:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1dt0c2, region C:84-195 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dt0_B] [1dt0] [1dt0_C] [1dt0_A]
  • SWISS-PROT database: [P09223]
  • Domain organization of [SODF_PSEPU] by SWISSPFAM
    • Other resources with information on 1DT0
  • Community annotation for 1DT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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