1DT5 Hydrolase date Jan 11, 2000
title The Structural Origins Of Interfacial Activation In Thermomy (Humicola) Lanuginosa Lipase
authors A.M.Brozozowski, H.Savage
compound source
Molecule: Lipase
Chain: A, B, C, D, E, F, G, H
Ec: 3.1.1.3
 Organism_scientific: Thermomyces Lanuginosus
Organism_taxid: 5541
symmetry Space Group: P 1 21 1
R_factor 0.244 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.435 162.878 86.717 90.00 98.45 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1DTE, 1DU4
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural origins of the interfacial activation in Thermomyces (Humicola) lanuginosa lipase., Brzozowski AM, Savage H, Verma CS, Turkenburg JP, Lawson DM, Svendsen A, Patkar S, Biochemistry 2000 Dec 12;39(49):15071-82. PMID:11106485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (1dt5.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1dt5.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (1dt5.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (1dt5.pdb4.gz) 47 Kb
  • Biological Unit Coordinates (1dt5.pdb5.gz) 47 Kb
  • Biological Unit Coordinates (1dt5.pdb6.gz) 47 Kb
  • Biological Unit Coordinates (1dt5.pdb7.gz) 46 Kb
  • Biological Unit Coordinates (1dt5.pdb8.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1DT5
  • Likely Quarternary Molecular Structure file(s) for 1DT5
  • Retrieve 1DT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DT5 from S2C, [Save to disk]
    • View 1DT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DT5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dt5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dt5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1dt5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1dt5d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1dt5e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1dt5f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1dt5g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1dt5h_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dt5_D] [1dt5_H] [1dt5_A] [1dt5] [1dt5_F] [1dt5_G] [1dt5_C] [1dt5_E] [1dt5_B]
  • SWISS-PROT database: [O59952]
  • Domain organization of [LIP_THELA] by SWISSPFAM
    • Other resources with information on 1DT5
  • Community annotation for 1DT5 at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1DT5 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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