1DT6 Oxidoreductase date Jan 11, 2000
title Structure Of Mammalian Cytochrome P450 2c5
authors P.A.Williams, J.Cosme, V.Sridhar, E.F.Johnson, D.E.Mcree
compound source
Molecule: Cytochrome P450 2c5
Chain: A
Fragment: Cyp2c5 With Membrane Spanning Residues 3-21 Delet Residue Histidine Tag At The C-Terminus Containing Addition Internal Mutations;
Synonym: Progesterone 21-Hydroxylase, Cypiic5 P450 1, P450i
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw
symmetry Space Group: I 2 2 2
R_factor 0.238 R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.700 132.000 172.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand HEM, SM, SO4 enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
related structures by homologous chain: 1PQ2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity., Williams PA, Cosme J, Sridhar V, Johnson EF, McRee DE, Mol Cell 2000 Jan;5(1):121-31. PMID:10678174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1dt6.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (1dt6.pdb2.gz) 287 Kb
  • LPC: Ligand-Protein Contacts for 1DT6
  • CSU: Contacts of Structural Units for 1DT6
  • Likely Quarternary Molecular Structure file(s) for 1DT6
  • Structure Factors (128 Kb)
  • Retrieve 1DT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DT6 from S2C, [Save to disk]
  • Re-refined 1dt6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DT6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DT6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dt6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dt6] [1dt6_A]
  • SWISS-PROT database: [P00179]
  • Domain organization of [CP2C5_RABIT] by SWISSPFAM
  • Other resources with information on 1DT6
  • Community annotation for 1DT6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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