1DTJ Immune System date Jan 12, 2000
title Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding Domai
authors H.A.Lewis, H.Chen, C.Edo, R.J.Buckanovich, Y.Y.L.Yang, K.Musunuru R.B.Darnell, S.K.Burley
compound source
Molecule: Rna-Binding Neurooncological Ventral Antigen 2
Chain: A, B, C, D
Fragment: Third Kh Domain Of Nova-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Cell: Neuron
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
symmetry Space Group: C 1 2 1
R_factor 0.225 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.500 61.100 97.300 90.00 98.20 90.00
method X-Ray Diffractionresolution 2.00 Å
note 1DTJ is a representative structure
related structures by homologous chain: 1EC6
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains., Lewis HA, Chen H, Edo C, Buckanovich RJ, Yang YY, Musunuru K, Zhong R, Darnell RB, Burley SK, Structure Fold Des 1999 Feb 15;7(2):191-203. PMID:10368286
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1dtj.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (1dtj.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (1dtj.pdb3.gz) 12 Kb
  • Biological Unit Coordinates (1dtj.pdb4.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1DTJ
  • Likely Quarternary Molecular Structure file(s) for 1DTJ
  • Structure Factors (205 Kb)
  • Retrieve 1DTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DTJ from S2C, [Save to disk]
  • Re-refined 1dtj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DTJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DTJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dtja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dtjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1dtjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1dtjd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dtj] [1dtj_A] [1dtj_C] [1dtj_B] [1dtj_D]
  • SWISS-PROT database: [Q9UNW9]
  • Domain organization of [NOVA2_HUMAN] by SWISSPFAM
  • Domain found in 1DTJ: [KH ] by SMART
  • Other resources with information on 1DTJ
  • Community annotation for 1DTJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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